(lnd_init_mct) :CLM land model initialization check EClock 20061201 12 check startdate -9999999 check EClock after inittime 20061201 0 ccsm4_0_racm32 Attempting to initialize the land model ..... Attempting to initialize run control settings 0 Read in vic_inparm namelist from: lnd_in Successfully initialized run control settings 1200 define run: source = Community Land Model CLM3.6 model_version = ccsm4_0_racm32 run type = branch case title = UNSET case name = r30RB1g_branch_A.2 output format type = NETCDF username = fisel hostname = garnet input data files: PFT physiology = /work/craig/RACM/inputdata/lnd/vic/pftdata/pft-physiology.c070321 surface data = /work/craig/RACM/inputdata/lnd/vic/surfdata/surfdata_wr50a_101013.nc flndtopo not set atm grid data = /work/craig/RACM/inputdata/lnd/vic/griddata/griddata_wr50a_101013.nc lake grid data = /work/craig/RACM/inputdata/lnd/vic/griddata/lakegrid_wr50a_101013 init data = /work/craig/RACM/inputdata/lnd/vic/surfdata/vic_initdata_wr50a.08311989 land frac data = /work/craig/RACM/inputdata/lnd/vic/griddata/fracdata_wr50a_ar9v4_101013.nc fatmtopo not set NOT using input data for nitrogen deposition NOT using dynamic input data for nitrogen deposition restart data = r30RB1g.vic.r.2006-12-01-00000.nc atmospheric forcing data is from sequential ccsm model Restart parameters: restart pointer file directory = . restart pointer file name = rpointer.lnd initial datasets will not be produced model physics parameters: flag for random perturbation test is not set solar radiation frequency (iterations) = 3 CO2 volume mixing ratio (umol/mol) = 368.9000000000000 branch warning: Namelist not checked for agreement with initial run. Surface data set and reference date should not differ from initial run maxpatch_pft = 4 allocate_all_vegpfts = F nsegspc = 20 history/PIO parameters: hist_pioflag = F ncd_lowmem2d = T ncd_pio_def = F ncd_pio_UseRearranger = T ncd_pio_UseBoxRearr = F ncd_pio_SerialCDF = F ncd_pio_IODOF_rootonly = F ncd_pio_DebugLevel = 2 ncd_pio_num_iotasks = 999999999 Attempting to read alatlon from fatmgrid (GETFIL): attempting to find local file griddata_wr50a_101013.nc (GETFIL): using /work/craig/RACM/inputdata/lnd/vic/griddata/griddata_wr50a_101013.nc (GETFIL): attempting to find local file fracdata_wr50a_ar9v4_101013.nc (GETFIL): using /work/craig/RACM/inputdata/lnd/vic/griddata/fracdata_wr50a_ar9v4_101013.nc Attempting to read lake grid data ..... (GETFIL): attempting to find local file lakegrid_wr50a_101013 (GETFIL): using /work/craig/RACM/inputdata/lnd/vic/griddata/lakegrid_wr50a_101013 (OPNFIL): Successfully opened file /work/craig/RACM/inputdata/lnd/vic/griddata/lakegrid_wr50a_101013 on unit= 98 latlon_check ns = 56375 latlon_check ni,nj = 275 205 latlon_check set = domain_set latlon_check regional = F latlon_check edgeNESW = 89.64679135607670 359.8782332039790 16.41326939266162 0.1119627859144200 latlon_check lonc = 189.2229322311162 294.2743993128499 latlon_check latc = 16.53498636788452 26.04834154931691 latlon_check lonw = 189.0959386820696 294.4120871464374 latlon_check lone = 189.3499215947565 294.1367211675541 latlon_check lats = 16.41326939266162 25.88505009626665 latlon_check latn = 16.65660852389095 26.21114693919522 amask size/min/max 56375 0 1 Attempting to read llatlon from fsurdat (GETFIL): attempting to find local file surfdata_wr50a_101013.nc (GETFIL): using /work/craig/RACM/inputdata/lnd/vic/surfdata/surfdata_wr50a_101013.nc Attempting to read lake grid data ..... (GETFIL): attempting to find local file lakegrid_wr50a_101013 (GETFIL): using /work/craig/RACM/inputdata/lnd/vic/griddata/lakegrid_wr50a_101013 (OPNFIL): Successfully opened file /work/craig/RACM/inputdata/lnd/vic/griddata/lakegrid_wr50a_101013 on unit= 98 latlon_check ns = 56375 latlon_check ni,nj = 275 205 latlon_check set = domain_set latlon_check regional = F latlon_check edgeNESW = 89.64679135607670 359.8782332039790 16.41326939266162 0.1119627859144200 latlon_check lonc = 189.2229322311162 294.2743993128499 latlon_check latc = 16.53498636788452 26.04834154931691 latlon_check lonw = 189.0959386820696 294.4120871464374 latlon_check lone = 189.3499215947565 294.1367211675541 latlon_check lats = 16.41326939266162 25.88505009626665 latlon_check latn = 16.65660852389095 26.21114693919522 initialize1: set llatlon =~ alatlon:continue 0.000000000000000 0.000000000000000 latlon_setsame: copying 275 205 precompute total anumg 25996 25996 20.00000000000000 Atm Grid Characteristics longitude points = 275 latitude points = 205 total number of gridcells = 25996 Decomposition Characteristics clumps per process = 1 gsMap Characteristics atm gsmap glo num of segs = 1249 proc= 0 beg atmcell = 1 end atmcell = 1628 total atmcells per proc = 1628 proc= 0 atm ngseg = 1249 atm nlseg = 70 proc= 0 nclumps = 1 setgatm overlapgrid,latlongrid = T T Atm Grid Characteristics longitude points = 275 latitude points = 205 total number of gridcells = 25996 Surface Grid Characteristics longitude points = 275 latitude points = 205 total number of gridcells = 25996 Decomposition Characteristics clumps per process = 1 gsMap Characteristics lnd gsmap glo num of segs = 1249 atm gsmap glo num of segs = 1249 Entering pass_mpi_param Attempting to read adomain from fatmgrid (GETFIL): attempting to find local file griddata_wr50a_101013.nc (GETFIL): using /work/craig/RACM/inputdata/lnd/vic/griddata/griddata_wr50a_101013.nc check_var: variable LANDMASK is not on dataset check_var: variable PFTDATA_MASK is not on dataset Attempting to read atm landfrac from fatmlndfrc (GETFIL): attempting to find local file fracdata_wr50a_ar9v4_101013.nc (GETFIL): using /work/craig/RACM/inputdata/lnd/vic/griddata/fracdata_wr50a_ar9v4_101013.nc adomain status: domain_check set = domain_set domain_check decomped = T domain_check regional = F domain_check areaset = T domain_check ns = 56375 domain_check ni,nj = 275 205 domain_check clmlevel = atmgrid domain_check nbeg,nend = 1 1628 domain_check lonc = 0.1856994614521166 359.9447116856090 domain_check latc = 25.29166774231222 83.62129146649112 domain_check mask = 1 1 domain_check frac = 1.6689257784161526E-003 1.000000000000000 domain_check topo = 0.000000000000000 0.000000000000000 domain_check area = 1291.230974332884 2520.837195414533 domain_check pftm = -1677278139 2112411549 domain_check nara = 0.000000000000000 0.000000000000000 domain_check ntop = -9.9999996169031625E+035 -9.9999996169031625E+035 domain_check asca = 1.000000000000000 1.000000000000000 Attempting to read ldomain from fsurdat /work/craig/RACM/inputdata/lnd/vic/surfdata/surfdata_wr50a_101013.nc (GETFIL): attempting to find local file surfdata_wr50a_101013.nc (GETFIL): using /work/craig/RACM/inputdata/lnd/vic/surfdata/surfdata_wr50a_101013.nc check_var: variable LANDMASK is not on dataset domain_check set = domain_set domain_check decomped = T domain_check regional = F domain_check areaset = T domain_check ns = 56375 domain_check ni,nj = 275 205 domain_check clmlevel = lndgrid domain_check nbeg,nend = 1 1628 domain_check lonc = 0.1856994614521166 359.9447116856090 domain_check latc = 25.29166774231222 83.62129146649112 domain_check mask = -1677278139 2112411549 domain_check frac = -9.9999996169031625E+035 -9.9999996169031625E+035 domain_check topo = 0.000000000000000 0.000000000000000 domain_check area = 1291.230974332884 2520.837195414533 domain_check pftm = 0 0 domain_check nara = 0.000000000000000 0.000000000000000 domain_check ntop = -9.9999996169031625E+035 -9.9999996169031625E+035 domain_check asca = 1.000000000000000 1.000000000000000 initialize1: samegrids true, set ldomain =~ adomain domain_setsame: copying 275 205 decompInit_glcp gsmap [l,c,p] test passes for 1 Atm Grid Characteristics longitude points = 275 latitude points = 205 total number of gridcells = 25996 Surface Grid Characteristics longitude points = 275 latitude points = 205 total number of gridcells = 25996 Decomposition Characteristics clumps per process = 1 gsMap Characteristics atm gsmap glo num of segs = 1249 lnd gsmap glo num of segs = 1249 gce gsmap glo num of segs = 320 proc= 0 beg atmcell = 1 end atmcell = 1628 total atmcells per proc = 1628 proc= 0 beg gridcell= 1 end gridcell= 1628 total gridcells per proc= 1628 proc= 0 atm ngseg = 1249 atm nlseg = 70 proc= 0 lnd ngseg = 1249 lnd nlseg = 70 proc= 0 clump no = 1 clump id= 1 beg gridcell= 1 end gridcell= 1628 total gridcells per clump= 1628 end decompInit_glcp really end decompInit_glcp